Transcript: ENST00000409878.3 SLC23A3-010

Description

solute carrier family 23, member 3 [Source:HGNC Symbol;Acc:20601]

Gene Synonyms

E2BP3, FLJ31168, SVCT3, Yspl1

Location

Chromosome 2: 220,026,487-220,034,739 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 19 domains and features, is associated with 3642 variant alleles and maps to 436 oligo probes.

Gene

This transcript is a product of gene ENSG00000213901.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000455516.2	SLC23A3-005	2048	618aa	ENSP00000406546.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46517	Q6PIS1	NM_001144890.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295738.7	SLC23A3-001	2037	493aa	ENSP00000295738.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42819	Q6PIS1	NM_144712.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409878.3	SLC23A3-010	2010	610aa	ENSP00000386473.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46518	E2QRJ3 Q6PIS1	NM_001144889.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396775.3	SLC23A3-201	1958	194aa	ENSP00000379996.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZV11	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409370.2	SLC23A3-008	785	259aa	ENSP00000386989.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E2QRJ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430764.1	SLC23A3-007	559	179aa	ENSP00000388907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQ03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000318673.3	SLC23A3-003	2745	103aa	ENSP00000320919.3	Nonsense mediated decay		F8W735	-	-
ENST00000414999.1	SLC23A3-011	603	11aa	ENSP00000404697.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000421779.1	SLC23A3-004	537	128aa	ENSP00000393192.1	Nonsense mediated decay		F8WET7	-	-
ENST00000498327.1	SLC23A3-012	4222	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497918.1	SLC23A3-002	2221	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461812.1	SLC23A3-006	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465580.1	SLC23A3-009	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,010 bps, Translation length: 610 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PIS1

CCDS

This transcript is a member of the Human CCDS set: CCDS46518

Version

ENST00000409878.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000336331 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409878.3 SLC23A3-010

Summary