Transcript: ENST00000318673.3 SLC23A3-003

Description

solute carrier family 23, member 3 [Source:HGNC Symbol;Acc:20601]

Gene Synonyms

E2BP3, FLJ31168, SVCT3, Yspl1

Location

Chromosome 2: 219,940,695-220,034,709 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 4 domains and features, is associated with 39405 variant alleles and maps to 643 oligo probes.

Gene

This transcript is a product of gene ENSG00000213901.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000455516.2	SLC23A3-005	2048	618aa	ENSP00000406546.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46517	Q6PIS1	NM_001144890.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295738.7	SLC23A3-001	2037	493aa	ENSP00000295738.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42819	Q6PIS1	NM_144712.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409878.3	SLC23A3-010	2010	610aa	ENSP00000386473.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46518	E2QRJ3 Q6PIS1	NM_001144889.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396775.3	SLC23A3-201	1958	194aa	ENSP00000379996.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZV11	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409370.2	SLC23A3-008	785	259aa	ENSP00000386989.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E2QRJ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430764.1	SLC23A3-007	559	179aa	ENSP00000388907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQ03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000318673.3	SLC23A3-003	2745	103aa	ENSP00000320919.3	Nonsense mediated decay		F8W735	-	-
ENST00000414999.1	SLC23A3-011	603	11aa	ENSP00000404697.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000421779.1	SLC23A3-004	537	128aa	ENSP00000393192.1	Nonsense mediated decay		F8WET7	-	-
ENST00000498327.1	SLC23A3-012	4222	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497918.1	SLC23A3-002	2221	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461812.1	SLC23A3-006	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465580.1	SLC23A3-009	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 3, Transcript length: 2,745 bps, Translation length: 103 residues

Version

ENST00000318673.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336312 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000318673.3 SLC23A3-003

Summary