Transcript: ENST00000530309.1 CASP4-012

Description

caspase 4, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1505]

Gene Synonyms

ICE(rel)II, ICEREL-II, ICH-2, ICH2, Mih1/TX, TX

Location

Chromosome 11: 104,813,600-104,818,085 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2028 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSG00000196954.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000444739.2	CASP4-001	2158	377aa	ENSP00000388566.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8327	E9PMT1 P49662 Q7KYX7	NM_001225.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393150.3	CASP4-004	1340	321aa	ENSP00000376857.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41704	P49662 Q7KYX7	NM_033306.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417440.2	CASP4-007	763	147aa	ENSP00000401673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMT1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533252.1	CASP4-013	215	72aa	ENSP00000432879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000531333.1	CASP4-008	667	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529183.1	CASP4-009	612	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529565.1	CASP4-006	4745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533730.1	CASP4-005	1214	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524843.1	CASP4-002	978	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531546.1	CASP4-003	921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534356.1	CASP4-010	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525116.1	CASP4-011	684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530309.1	CASP4-012	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 481 bps,

Version

ENST00000530309.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000387880 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000530309.1 CASP4-012

Summary