Transcript: ENST00000444739.2 CASP4-001

Description

caspase 4, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1505]

Gene Synonyms

ICE(rel)II, ICEREL-II, ICH-2, ICH2, Mih1/TX, TX

Location

Chromosome 11: 104,813,593-104,840,163 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 24 domains and features, is associated with 11949 variant alleles and maps to 487 oligo probes.

Gene

This transcript is a product of gene ENSG00000196954.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000444739.2	CASP4-001	2158	377aa	ENSP00000388566.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8327	E9PMT1 P49662 Q7KYX7	NM_001225.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393150.3	CASP4-004	1340	321aa	ENSP00000376857.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41704	P49662 Q7KYX7	NM_033306.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417440.2	CASP4-007	763	147aa	ENSP00000401673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMT1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533252.1	CASP4-013	215	72aa	ENSP00000432879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000531333.1	CASP4-008	667	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529183.1	CASP4-009	612	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529565.1	CASP4-006	4745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533730.1	CASP4-005	1214	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000524843.1	CASP4-002	978	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531546.1	CASP4-003	921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534356.1	CASP4-010	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525116.1	CASP4-011	684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530309.1	CASP4-012	481	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,158 bps, Translation length: 377 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49662

CCDS

This transcript is a member of the Human CCDS set: CCDS8327

Version

ENST00000444739.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387751 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000444739.2 CASP4-001

Summary