Transcript: ENST00000450482.1 SS18L1-004

Description

synovial sarcoma translocation gene on chromosome 18-like 1 [Source:HGNC Symbol;Acc:15592]

Gene Synonyms

CREST, KIAA0693, LP2261

Location

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 10131 variant alleles and maps to 179 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331758.3	SS18L1-003	4493	396aa	ENSP00000333012.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13491	O75177	NM_198935.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421564.1	SS18L1-202	3703	396aa	ENSP00000393999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13491	O75177	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370848.4	SS18L1-201	3657	399aa	ENSP00000359885.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75177 Q9BR54	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450482.1	SS18L1-004	781	128aa	ENSP00000398634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BR54	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492466.2	SS18L1-001	899	211aa	ENSP00000434451.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000491916.1	SS18L1-002	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 781 bps, Translation length: 128 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000450482.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000080005 (version 2)