Transcript: ENST00000331758.3 SS18L1-003

Description

synovial sarcoma translocation gene on chromosome 18-like 1 [Source:HGNC Symbol;Acc:15592]

Gene Synonyms

CREST, KIAA0693, LP2261

Location

About this transcript

This transcript has 11 exons, is annotated with 8 domains and features, is associated with 21410 variant alleles and maps to 534 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331758.3	SS18L1-003	4493	396aa	ENSP00000333012.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13491	O75177	NM_198935.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421564.1	SS18L1-202	3703	396aa	ENSP00000393999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13491	O75177	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370848.4	SS18L1-201	3657	399aa	ENSP00000359885.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75177 Q9BR54	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450482.1	SS18L1-004	781	128aa	ENSP00000398634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BR54	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000492466.2	SS18L1-001	899	211aa	ENSP00000434451.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000491916.1	SS18L1-002	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,493 bps, Translation length: 396 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75177

CCDS

This transcript is a member of the Human CCDS set: CCDS13491

Version

ENST00000331758.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000080004 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.