Transcript: ENST00000496944.1 NIPSNAP1-005

Description

nipsnap homolog 1 (C. elegans) [Source:HGNC Symbol;Acc:7827]

Location

About this transcript

This transcript has 3 exons, is associated with 5138 variant alleles and maps to 146 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216121.7	NIPSNAP1-001	2237	284aa	ENSP00000216121.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13860	C9JDV8 Q9BPW8	NM_003634.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415100.1	NIPSNAP1-003	661	221aa	ENSP00000407851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDV8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000437094.1	NIPSNAP1-002	654	69aa	ENSP00000403448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455496.1	NIPSNAP1-007	600	128aa	ENSP00000404227.1	Nonsense mediated decay		F8WCR5	-	-
ENST00000494966.1	NIPSNAP1-004	441	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496944.1	NIPSNAP1-005	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 586 bps,

Version

ENST00000496944.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322121 (version 1)