Description
serine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:10850]
Gene Synonyms
CSHMT, MGC15229, MGC24556, SHMT, hsa-mir-6778
Location
Chromosome 17: 18,256,824-18,266,832 reverse strand.
About this transcript
This transcript has 3 exons, is associated with 5291 variant alleles and maps to 118 oligo probes.
Gene
This transcript is a product of gene ENSG00000176974.13 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000316694.3 | SHMT1-001 | 2464 | 483aa | ENSP00000318868.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11196 | B4DPM9 J3KRZ5 P34896 Q9UMC9 | NM_004169.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000352886.6 | SHMT1-201 | 2136 | 403aa | ENSP00000345881.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRZ5 P34896 Q9UMC9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000539052.1 | SHMT1-202 | 1759 | 345aa | ENSP00000440089.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS62112 | B4DPM9 Q9UMC9 | NM_001281786.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000354098.3 | SHMT1-003 | 1656 | 444aa | ENSP00000318805.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11197 | J3KRZ5 P34896 Q9UMC9 | NM_148918.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000582653.1 | SHMT1-009 | 879 | 167aa | ENSP00000462227.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRZ5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000583780.1 | SHMT1-007 | 332 | 1aa | ENSP00000462041.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000580002.1 | SHMT1-006 | 1759 | 128aa | ENSP00000462043.1 | Nonsense mediated decay | J3KRK5 | - | - | |
| ENST00000582352.1 | SHMT1-010 | 2756 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000395684.1 | SHMT1-004 | 2652 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000579558.1 | SHMT1-008 | 1077 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000395682.3 | SHMT1-005 | 570 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |