Transcript: ENST00000354098.3 SHMT1-003

Description

serine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:10850]

Gene Synonyms

CSHMT, MGC15229, MGC24556, SHMT, hsa-mir-6778

Location

Chromosome 17: 18,231,842-18,266,765 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 10 domains and features, is associated with 17278 variant alleles and maps to 497 oligo probes.

Gene

This transcript is a product of gene ENSG00000176974.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316694.3	SHMT1-001	2464	483aa	ENSP00000318868.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11196	B4DPM9 J3KRZ5 P34896 Q9UMC9	NM_004169.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352886.6	SHMT1-201	2136	403aa	ENSP00000345881.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRZ5 P34896 Q9UMC9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539052.1	SHMT1-202	1759	345aa	ENSP00000440089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62112	B4DPM9 Q9UMC9	NM_001281786.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354098.3	SHMT1-003	1656	444aa	ENSP00000318805.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11197	J3KRZ5 P34896 Q9UMC9	NM_148918.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582653.1	SHMT1-009	879	167aa	ENSP00000462227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRZ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000583780.1	SHMT1-007	332	1aa	ENSP00000462041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580002.1	SHMT1-006	1759	128aa	ENSP00000462043.1	Nonsense mediated decay		J3KRK5	-	-
ENST00000582352.1	SHMT1-010	2756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000395684.1	SHMT1-004	2652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579558.1	SHMT1-008	1077	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000395682.3	SHMT1-005	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,656 bps, Translation length: 444 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P34896

CCDS

This transcript is a member of the Human CCDS set: CCDS11197

Version

ENST00000354098.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000130833 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000354098.3 SHMT1-003

Summary