Transcript: ENST00000532881.1 SSH3-002

Description

slingshot protein phosphatase 3 [Source:HGNC Symbol;Acc:30581]

Gene Synonyms

FLJ10928, FLJ20515, SSH3L

Location

Chromosome 11: 67,070,949-67,080,076 forward strand.

About this transcript

This transcript has 13 exons, is associated with 4750 variant alleles and maps to 634 oligo probes.

Gene

This transcript is a product of gene ENSG00000172830.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308127.4	SSH3-001	2871	659aa	ENSP00000312081.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8157	Q8TE77	NM_017857.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376757.5	SSH3-008	2587	471aa	ENSP00000365948.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8TE77	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308298.7	SSH3-011	2046	394aa	ENSP00000310055.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JUG3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527821.1	SSH3-004	656	207aa	ENSP00000433902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIT5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532881.1	SSH3-002	2990	24aa	ENSP00000431788.1	Nonsense mediated decay		E9PJJ6	-	-
ENST00000532600.1	SSH3-010	555	41aa	ENSP00000432974.1	Nonsense mediated decay		E9PMS1	-	-
ENST00000532181.1	SSH3-006	948	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529224.1	SSH3-009	673	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531495.1	SSH3-005	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534112.1	SSH3-003	544	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525913.1	SSH3-007	264	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 2, Transcript length: 2,990 bps, Translation length: 24 residues

Version

ENST00000532881.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000393168 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000532881.1 SSH3-002

Summary