Transcript: ENST00000512482.1 COL6A5-002

Description

collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]

Gene Synonyms

COL29A1, FLJ35880, VWA4

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 13936 variant alleles and maps to 212 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000265379.6	COL6A5-201	9226	2615aa	ENSP00000265379.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PAL5	NM_001278298.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432398.2	COL6A5-202	8878	2526aa	ENSP00000390895.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W8G8	NM_153264.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512836.1	COL6A5-003	3138	778aa	ENSP00000422898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512482.1	COL6A5-002	1780	443aa	ENSP00000424968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y9T2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000373157.4	COL6A5-004	1770	557aa	ENSP00000362250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y393	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000312481.7	COL6A5-001	9226	2615aa	ENSP00000309762.7	Nonsense mediated decay	A8TX70	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,780 bps, Translation length: 443 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000512482.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357013 (version 2)