Transcript: ENST00000312481.7 COL6A5-001

Description

collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]

Gene Synonyms

COL29A1, FLJ35880, VWA4

Location

About this transcript

This transcript has 42 exons, is annotated with 68 domains and features, is associated with 57576 variant alleles and maps to 1388 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000265379.6	COL6A5-201	9226	2615aa	ENSP00000265379.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PAL5	NM_001278298.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432398.2	COL6A5-202	8878	2526aa	ENSP00000390895.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W8G8	NM_153264.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512836.1	COL6A5-003	3138	778aa	ENSP00000422898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512482.1	COL6A5-002	1780	443aa	ENSP00000424968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y9T2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000373157.4	COL6A5-004	1770	557aa	ENSP00000362250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y393	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000312481.7	COL6A5-001	9226	2615aa	ENSP00000309762.7	Nonsense mediated decay	A8TX70	-	-

Summary

Statistics

Exons: 42, Coding exons: 40, Transcript length: 9,226 bps, Translation length: 2,615 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A8TX70

Version

ENST00000312481.7

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357014 (version 1)