Transcript: ENST00000491388.2 ALCAM-006

Description

activated leukocyte cell adhesion molecule [Source:HGNC Symbol;Acc:400]

Gene Synonyms

CD166, MEMD

Location

Chromosome 3: 105,263,446-105,294,758 forward strand.

About this transcript

This transcript has 8 exons, is associated with 12966 variant alleles and maps to 501 oligo probes.

Gene

This transcript is a product of gene ENSG00000170017.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306107.5	ALCAM-001	4701	583aa	ENSP00000305988.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33810	F5GXJ9 Q13740	NM_001627.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472644.2	ALCAM-002	4189	570aa	ENSP00000419236.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58841	Q13740	NM_001243280.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465413.2	ALCAM-007	2496	344aa	ENSP00000418937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZS95	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000389927.4	ALCAM-201	2496	305aa	ENSP00000374577.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZS95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486979.2	ALCAM-005	1818	532aa	ENSP00000418213.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXJ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481337.1	ALCAM-004	1242	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460954.1	ALCAM-008	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491388.2	ALCAM-006	2845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470756.1	ALCAM-003	1770	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489178.1	ALCAM-009	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 2,845 bps,

Version

ENST00000491388.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000353769 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000491388.2 ALCAM-006

Summary