Transcript: ENST00000563197.1 INO80E-001

Description

INO80 complex subunit E [Source:HGNC Symbol;Acc:26905]

Gene Synonyms

CCDC95, FLJ90652

Location

Chromosome 16: 30,006,615-30,017,114 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 5677 variant alleles and maps to 296 oligo probes.

Gene

This transcript is a product of gene ENSG00000169592.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000563197.1	INO80E-001	2103	244aa	ENSP00000457016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10665	Q8NBZ0	NM_173618.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304516.7	INO80E-002	1489	205aa	ENSP00000303977.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNE2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567705.1	INO80E-012	880	227aa	ENSP00000454924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNM4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567254.1	INO80E-010	625	173aa	ENSP00000461808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3NI13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562291.2	INO80E-015	255	85aa	ENSP00000458392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567987.1	INO80E-006	1926	188aa	ENSP00000459432.1	Nonsense mediated decay		I3L270	-	-
ENST00000562441.1	INO80E-004	1412	137aa	ENSP00000456073.1	Nonsense mediated decay		Q6Y2K3 Q8TEI7	-	-
ENST00000567065.1	INO80E-011	883	137aa	ENSP00000454665.1	Nonsense mediated decay		Q6Y2K3 Q8TEI7	-	-
ENST00000563040.1	INO80E-008	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569957.1	INO80E-003	4469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540562.1	INO80E-005	3064	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568043.1	INO80E-007	482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000380503.7	INO80E-014	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,103 bps, Translation length: 244 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NBZ0

CCDS

This transcript is a member of the Human CCDS set: CCDS10665

Version

ENST00000563197.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255156 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000563197.1 INO80E-001

Summary