Transcript: ENST00000562441.1 INO80E-004

Description

INO80 complex subunit E [Source:HGNC Symbol;Acc:26905]

Gene Synonyms

CCDC95, FLJ90652

Location

Chromosome 16: 30,007,567-30,017,083 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 5 domains and features, is associated with 4989 variant alleles and maps to 293 oligo probes.

Gene

This transcript is a product of gene ENSG00000169592.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000563197.1	INO80E-001	2103	244aa	ENSP00000457016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10665	Q8NBZ0	NM_173618.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304516.7	INO80E-002	1489	205aa	ENSP00000303977.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNE2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567705.1	INO80E-012	880	227aa	ENSP00000454924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNM4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567254.1	INO80E-010	625	173aa	ENSP00000461808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3NI13	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562291.2	INO80E-015	255	85aa	ENSP00000458392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567987.1	INO80E-006	1926	188aa	ENSP00000459432.1	Nonsense mediated decay		I3L270	-	-
ENST00000562441.1	INO80E-004	1412	137aa	ENSP00000456073.1	Nonsense mediated decay		Q6Y2K3 Q8TEI7	-	-
ENST00000567065.1	INO80E-011	883	137aa	ENSP00000454665.1	Nonsense mediated decay		Q6Y2K3 Q8TEI7	-	-
ENST00000563040.1	INO80E-008	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569957.1	INO80E-003	4469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540562.1	INO80E-005	3064	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568043.1	INO80E-007	482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000380503.7	INO80E-014	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,412 bps, Translation length: 137 residues

Version

ENST00000562441.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000435330 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000562441.1 INO80E-004

Summary