Transcript: ENST00000399220.2 CX3CR1-001

Description

chemokine (C-X3-C motif) receptor 1 [Source:HGNC Symbol;Acc:2558]

Gene Synonyms

CCRL1, CMKBRL1, CMKDR1, GPR13, GPRV28, V28

Location

Chromosome 3: 39,304,985-39,321,525 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 33 domains and features, is associated with 6876 variant alleles and maps to 274 oligo probes.

Gene

This transcript is a product of gene ENSG00000168329.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541347.1	CX3CR1-202	3255	355aa	ENSP00000439140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43069	C9JLM2 C9JN40 P49238	NM_001171171.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542107.1	CX3CR1-203	3215	355aa	ENSP00000444928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43069	C9JLM2 C9JN40 P49238	NM_001171172.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358309.3	CX3CR1-201	3151	387aa	ENSP00000351059.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54571	C9JLM2 C9JN40 P49238	NM_001171174.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399220.2	CX3CR1-001	3106	355aa	ENSP00000382166.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43069	C9JLM2 C9JN40 P49238	NM_001337.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435290.1	CX3CR1-003	699	166aa	ENSP00000394960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLM2 C9JN40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412814.1	CX3CR1-004	559	106aa	ENSP00000408835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,106 bps, Translation length: 355 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49238

CCDS

This transcript is a member of the Human CCDS set: CCDS43069

Version

ENST00000399220.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000343613 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000399220.2 CX3CR1-001

Summary