Transcript: ENST00000509791.3 SEC11C-005

Description

SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]

Gene Synonyms

SEC11L3, SPC21, SPCS4C

Location

Chromosome 18: 56,807,098-56,823,688 forward strand.

About this transcript

This transcript has 4 exons, is associated with 6788 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSG00000166562.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000587834.1	SEC11C-001	1202	192aa	ENSP00000468633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11970	B4DI03 Q9BY50	NM_033280.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588875.1	SEC11C-006	718	161aa	ENSP00000465281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DI03 K7EJQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299714.3	SEC11C-007	727	99aa	ENSP00000299714.3	Nonsense mediated decay		-	-	-
ENST00000592774.1	SEC11C-002	1189	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593132.1	SEC11C-003	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509791.3	SEC11C-005	1199	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585864.1	SEC11C-004	1088	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591406.1	SEC11C-008	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,199 bps,

Version

ENST00000509791.3

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000449405 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000509791.3 SEC11C-005

Summary