Transcript: ENST00000299714.3 SEC11C-007

Description

SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]

Gene Synonyms

SEC11L3, SPC21, SPCS4C

Location

Chromosome 18: 56,807,107-56,826,064 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 7650 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000166562.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000587834.1	SEC11C-001	1202	192aa	ENSP00000468633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11970	B4DI03 Q9BY50	NM_033280.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588875.1	SEC11C-006	718	161aa	ENSP00000465281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DI03 K7EJQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299714.3	SEC11C-007	727	99aa	ENSP00000299714.3	Nonsense mediated decay		-	-	-
ENST00000592774.1	SEC11C-002	1189	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593132.1	SEC11C-003	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509791.3	SEC11C-005	1199	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585864.1	SEC11C-004	1088	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591406.1	SEC11C-008	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 727 bps, Translation length: 99 residues

Version

ENST00000299714.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000449406 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000299714.3 SEC11C-007

Summary