Transcript: ENST00000554514.1 ARHGEF40-006

Description

Rho guanine nucleotide exchange factor (GEF) 40 [Source:HGNC Symbol;Acc:25516]

Gene Synonyms

FLJ10357, SOLO, solo

Location

Chromosome 14: 21,549,056-21,557,704 forward strand.

About this transcript

This transcript has 10 exons, is associated with 4171 variant alleles and maps to 557 oligo probes.

Gene

This transcript is a product of gene ENSG00000165801.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298694.4	ARHGEF40-001	5919	1519aa	ENSP00000298694.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32041	Q8TER5	NM_018071.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000298693.3	ARHGEF40-201	5314	1471aa	ENSP00000298693.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8TER5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555038.1	ARHGEF40-004	1796	557aa	ENSP00000451335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3N2 Q86TR4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553709.1	ARHGEF40-003	5204	620aa	ENSP00000452283.1	Nonsense mediated decay		G3V5C1	-	-
ENST00000556399.1	ARHGEF40-002	4902	502aa	ENSP00000451655.1	Nonsense mediated decay		G3V485	-	-
ENST00000555232.1	ARHGEF40-005	3902	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554514.1	ARHGEF40-006	2928	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555052.1	ARHGEF40-008	935	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557498.1	ARHGEF40-009	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 2,928 bps,

Version

ENST00000554514.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000413129 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000554514.1 ARHGEF40-006

Summary