Transcript: ENST00000298694.4 ARHGEF40-001

Description

Rho guanine nucleotide exchange factor (GEF) 40 [Source:HGNC Symbol;Acc:25516]

Gene Synonyms

FLJ10357, SOLO, solo

Location

Chromosome 14: 21,538,429-21,558,399 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 28 domains and features, is associated with 9666 variant alleles and maps to 974 oligo probes.

Gene

This transcript is a product of gene ENSG00000165801.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298694.4	ARHGEF40-001	5919	1519aa	ENSP00000298694.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32041	Q8TER5	NM_018071.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000298693.3	ARHGEF40-201	5314	1471aa	ENSP00000298693.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8TER5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555038.1	ARHGEF40-004	1796	557aa	ENSP00000451335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3N2 Q86TR4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553709.1	ARHGEF40-003	5204	620aa	ENSP00000452283.1	Nonsense mediated decay		G3V5C1	-	-
ENST00000556399.1	ARHGEF40-002	4902	502aa	ENSP00000451655.1	Nonsense mediated decay		G3V485	-	-
ENST00000555232.1	ARHGEF40-005	3902	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554514.1	ARHGEF40-006	2928	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555052.1	ARHGEF40-008	935	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557498.1	ARHGEF40-009	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 5,919 bps, Translation length: 1,519 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TER5

CCDS

This transcript is a member of the Human CCDS set: CCDS32041

Version

ENST00000298694.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000413122 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000298694.4 ARHGEF40-001

Summary