Transcript: ENST00000368147.4 SPTA1-001

Description

spectrin, alpha, erythrocytic 1 (elliptocytosis 2) [Source:HGNC Symbol;Acc:11272]

Gene Synonyms

EL2, HPP, HS3, SPH3, SPTA

Location

Chromosome 1: 158,580,496-158,656,488 reverse strand.

About this transcript

This transcript has 52 exons, is annotated with 122 domains and features, is associated with 39472 variant alleles and maps to 1383 oligo probes.

Gene

This transcript is a product of gene ENSG00000163554.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368147.4	SPTA1-001	7999	2419aa	ENSP00000357129.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41423	O60686 P02549	NM_003126.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467387.1	SPTA1-003	465	124aa	ENSP00000476485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485680.1	SPTA1-010	422	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461624.1	SPTA1-005	930	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492934.1	SPTA1-007	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484520.1	SPTA1-006	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465741.1	SPTA1-004	718	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481212.1	SPTA1-009	643	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498708.1	SPTA1-008	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 52, Coding exons: 52, Transcript length: 7,999 bps, Translation length: 2,419 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02549

CCDS

This transcript is a member of the Human CCDS set: CCDS41423

Version

ENST00000368147.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000051851 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000368147.4 SPTA1-001

Summary