Transcript: ENST00000534090.2 CAPN13-201

Description

calpain 13 [Source:HGNC Symbol;Acc:16663]

Gene Synonyms

FLJ23523

Location

About this transcript

This transcript has 23 exons, is annotated with 22 domains and features, is associated with 40174 variant alleles and maps to 551 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295055.8	CAPN13-001	2683	669aa	ENSP00000295055.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46252	Q6MZZ7	NM_144575.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534090.2	CAPN13-201	2677	669aa	ENSP00000431298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7Z8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450650.1	CAPN13-003	2328	125aa	ENSP00000403180.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000458085.2	CAPN13-004	2269	423aa	ENSP00000416191.2	Nonsense mediated decay		Q6MZZ7	-	-
ENST00000485248.2	CAPN13-006	710	102aa	ENSP00000440723.1	Nonsense mediated decay		F5GYA7	-	-
ENST00000465960.2	CAPN13-005	1215	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490786.1	CAPN13-008	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465450.2	CAPN13-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 21, Transcript length: 2,677 bps, Translation length: 669 residues

Version

ENST00000534090.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.