Transcript: ENST00000490786.1 CAPN13-008

Description

calpain 13 [Source:HGNC Symbol;Acc:16663]

Gene Synonyms

FLJ23523

Location

About this transcript

This transcript has 4 exons, is associated with 1458 variant alleles and maps to 100 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295055.8	CAPN13-001	2683	669aa	ENSP00000295055.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46252	Q6MZZ7	NM_144575.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534090.2	CAPN13-201	2677	669aa	ENSP00000431298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7Z8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450650.1	CAPN13-003	2328	125aa	ENSP00000403180.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000458085.2	CAPN13-004	2269	423aa	ENSP00000416191.2	Nonsense mediated decay		Q6MZZ7	-	-
ENST00000485248.2	CAPN13-006	710	102aa	ENSP00000440723.1	Nonsense mediated decay		F5GYA7	-	-
ENST00000465960.2	CAPN13-005	1215	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490786.1	CAPN13-008	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465450.2	CAPN13-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 506 bps,

Version

ENST00000490786.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325268 (version 1)