Transcript: ENST00000316948.4 CACFD1-001

Description

calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:1365]

Gene Synonyms

C9orf7, D9S2135, FLOWER, flower

Location

Chromosome 9: 136,325,109-136,335,970 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 6004 variant alleles and maps to 542 oligo probes.

Gene

This transcript is a product of gene ENSG00000160325.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316948.4	CACFD1-001	2794	172aa	ENSP00000317121.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6974	Q9UGQ2	NM_017586.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000291722.7	CACFD1-002	2688	130aa	ENSP00000291722.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48051	Q9UGQ2	NM_001135775.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542192.1	CACFD1-202	1277	191aa	ENSP00000444328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56592	Q9UGQ2	NM_001242370.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540581.1	CACFD1-201	1033	233aa	ENSP00000440832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56591	Q9UGQ2	NM_001242369.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444798.1	CACFD1-005	356	114aa	ENSP00000414495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6TGH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489519.1	CACFD1-004	795	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474734.1	CACFD1-003	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,794 bps, Translation length: 172 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UGQ2

CCDS

This transcript is a member of the Human CCDS set: CCDS6974

Version

ENST00000316948.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054915 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000316948.4 CACFD1-001

Summary