Transcript: ABCA9-006 ENST00000460872.1

Description

ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:39]

Gene Synonyms

EST640918

Location

Chromosome 17: 66,986,066-66,988,823 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 658 variant alleles and maps to 85 oligo probes.

Gene

This transcript is a product of gene ENSG00000154258.12 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ABCA9-001	ENST00000340001.4	6514	1624aa	ENSP00000342216.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11681	K7EJJ0 Q8IUA7	NM_080283 NP_525022	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCA9-201	ENST00000370732.2	6205	1435aa	ENSP00000359767.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	K7EJJ0 Q8IUA7	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCA9-002	ENST00000453985.2	6116	1586aa	ENSP00000394264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	H0Y4U7 K7EJJ0	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCA9-003	ENST00000495634.1	1428	267aa	ENSP00000465601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	K7EJJ0 Q8IUA7	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCA9-008	ENST00000585714.1	582	89aa	ENSP00000465191.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	K7EJJ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ABCA9-005	ENST00000482072.1	235	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
ABCA9-004	ENST00000461623.1	2172	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
ABCA9-006	ENST00000460872.1	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
ABCA9-007	ENST00000492580.1	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 635 bps,

Version

ENST00000460872.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000277077 (version 1)

Favourite species

All species

Recent locations

Transcript: ABCA9-006 ENST00000460872.1

Summary

Transcript-based displays