Transcript: ENST00000340001.4 ABCA9-001

Description

ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:39]

Gene Synonyms

EST640918

Location

Chromosome 17: 66,970,629-67,057,205 reverse strand.

About this transcript

This transcript has 39 exons, is annotated with 37 domains and features, is associated with 36530 variant alleles and maps to 1195 oligo probes.

Gene

This transcript is a product of gene ENSG00000154258.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340001.4	ABCA9-001	6514	1624aa	ENSP00000342216.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11681	K7EJJ0 Q8IUA7	NM_080283.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370732.2	ABCA9-201	6205	1435aa	ENSP00000359767.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ0 Q8IUA7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453985.2	ABCA9-002	6116	1586aa	ENSP00000394264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y4U7 K7EJJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495634.1	ABCA9-003	1428	267aa	ENSP00000465601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ0 Q8IUA7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585714.1	ABCA9-008	582	89aa	ENSP00000465191.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482072.1	ABCA9-005	235	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461623.1	ABCA9-004	2172	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460872.1	ABCA9-006	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492580.1	ABCA9-007	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 39, Coding exons: 38, Transcript length: 6,514 bps, Translation length: 1,624 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IUA7

CCDS

This transcript is a member of the Human CCDS set: CCDS11681

Version

ENST00000340001.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000277072 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000340001.4 ABCA9-001

Summary