Transcript: ENST00000494343.1 FGD2-007

Description

FYVE, RhoGEF and PH domain containing 2 [Source:HGNC Symbol;Acc:3664]

Gene Synonyms

ZFYVE4

Location

Chromosome 6: 36,980,801-36,996,845 forward strand.

About this transcript

This transcript has 12 exons, is associated with 7652 variant alleles and maps to 504 oligo probes.

Gene

This transcript is a product of gene ENSG00000146192.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000274963.8	FGD2-001	3046	655aa	ENSP00000274963.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4829	Q7Z6J4	NM_173558.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373535.2	FGD2-003	2197	102aa	ENSP00000362635.2	Nonsense mediated decay		H7BY95	-	-
ENST00000497659.1	FGD2-011	541	104aa	ENSP00000419657.1	Nonsense mediated decay		F8WEZ2	-	-
ENST00000493635.1	FGD2-009	5771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494343.1	FGD2-007	2931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464083.1	FGD2-006	2723	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487920.1	FGD2-010	2617	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489356.1	FGD2-002	1438	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470273.1	FGD2-008	1255	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487975.1	FGD2-005	1010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000459781.1	FGD2-012	866	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 2,931 bps,

Version

ENST00000494343.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000356029 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000494343.1 FGD2-007

Summary