Transcript: ENST00000393716.2 NR1I2-002

Description

nuclear receptor subfamily 1, group I, member 2 [Source:HGNC Symbol;Acc:7968]

Gene Synonyms

BXR, NR1I2, ONR1, PAR, PAR1, PAR2, PARq, PRR, PXR, SAR, SXR

Location

About this transcript

This transcript has 9 exons, is annotated with 22 domains and features, is associated with 17069 variant alleles and maps to 512 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393716.2	NR1I2-002	4417	434aa	ENSP00000377319.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43136	B3KVM5 J3KPQ3	NM_003889.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466380.1	NR1I2-003	4306	397aa	ENSP00000420297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54627	H0Y8E2	NM_033013.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337940.4	NR1I2-001	2743	473aa	ENSP00000336528.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2995	B3KVM5 F1D8P9 F1DAL3 J3KPQ3 O75469	NM_022002.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493757.1	NR1I2-005	2709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474090.1	NR1I2-004	977	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 4,417 bps, Translation length: 434 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS43136

Version

ENST00000393716.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000355127 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.