Transcript: ENST00000436654.1 CTDSPL-009

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like [Source:HGNC Symbol;Acc:16890]

Gene Synonyms

C3orf8, HYA22, NIF1, NIFL, PSR1, RBSP3, SCP3, YA22

Location

Chromosome 3: 38,017,264-38,023,875 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 2475 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000144677.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443503.2	CTDSPL-002	4640	265aa	ENSP00000398288.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33735	O15194	NM_005808.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273179.5	CTDSPL-001	4459	276aa	ENSP00000273179.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33734	O15194	NM_001008392.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436654.1	CTDSPL-009	804	103aa	ENSP00000409600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000447745.1	CTDSPL-008	793	196aa	ENSP00000407443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2S4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000416688.1	CTDSPL-007	368	93aa	ENSP00000404977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435525.1	CTDSPL-003	371	55aa	ENSP00000408183.1	Nonsense mediated decay		F8WED2	-	-
ENST00000310189.3	CTDSPL-005	1482	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486978.1	CTDSPL-004	609	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 804 bps, Translation length: 103 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000436654.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342398 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000436654.1 CTDSPL-009

Summary