Transcript: ENST00000273179.5 CTDSPL-001

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like [Source:HGNC Symbol;Acc:16890]

Gene Synonyms

C3orf8, HYA22, NIF1, NIFL, PSR1, RBSP3, SCP3, YA22

Location

Chromosome 3: 37,903,665-38,025,960 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 9 domains and features, is associated with 46503 variant alleles and maps to 551 oligo probes.

Gene

This transcript is a product of gene ENSG00000144677.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000443503.2	CTDSPL-002	4640	265aa	ENSP00000398288.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33735	O15194	NM_005808.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273179.5	CTDSPL-001	4459	276aa	ENSP00000273179.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33734	O15194	NM_001008392.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436654.1	CTDSPL-009	804	103aa	ENSP00000409600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000447745.1	CTDSPL-008	793	196aa	ENSP00000407443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2S4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000416688.1	CTDSPL-007	368	93aa	ENSP00000404977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435525.1	CTDSPL-003	371	55aa	ENSP00000408183.1	Nonsense mediated decay		F8WED2	-	-
ENST00000310189.3	CTDSPL-005	1482	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486978.1	CTDSPL-004	609	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,459 bps, Translation length: 276 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15194

CCDS

This transcript is a member of the Human CCDS set: CCDS33734

Version

ENST00000273179.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000342392 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000273179.5 CTDSPL-001

Summary