Transcript: ENST00000361866.3 COL6A1-001

Description

collagen, type VI, alpha 1 [Source:HGNC Symbol;Acc:2211]

Gene Synonyms

OPLL

Location

About this transcript

This transcript has 35 exons, is annotated with 35 domains and features, is associated with 16188 variant alleles and maps to 1146 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361866.3	COL6A1-001	4238	1028aa	ENSP00000355180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13727	P12109 Q05BT9	NM_001848.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498614.1	COL6A1-002	2358	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486023.1	COL6A1-003	968	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463060.1	COL6A1-006	863	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466285.1	COL6A1-005	500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492851.1	COL6A1-004	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 35, Transcript length: 4,238 bps, Translation length: 1,028 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12109

CCDS

This transcript is a member of the Human CCDS set: CCDS13727

Version

ENST00000361866.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206877 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.