Transcript: ENST00000579856.1 SCRN2-008

Description

secernin 2 [Source:HGNC Symbol;Acc:30381]

Gene Synonyms

Ses2

Location

Chromosome 17: 45,915,679-45,918,631 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 1600 variant alleles and maps to 375 oligo probes.

Gene

This transcript is a product of gene ENSG00000141295.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000407215.3	SCRN2-002	1779	378aa	ENSP00000383935.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45723	J3QR84 Q96FV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584123.1	SCRN2-006	1745	433aa	ENSP00000463411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL71 J3QR84	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000290216.9	SCRN2-001	1548	425aa	ENSP00000290216.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11519	J3QR84 Q96FV2	NM_138355.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584567.1	SCRN2-011	932	269aa	ENSP00000463809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578323.1	SCRN2-013	624	180aa	ENSP00000464093.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR84	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582459.1	SCRN2-004	1624	127aa	ENSP00000462845.1	Nonsense mediated decay		J3KT79	-	-
ENST00000581645.1	SCRN2-003	1477	271aa	ENSP00000464246.1	Nonsense mediated decay		J3QR84 J3QRJ1	-	-
ENST00000579856.1	SCRN2-008	952	97aa	ENSP00000462318.1	Nonsense mediated decay		J3KS57	-	-
ENST00000583090.1	SCRN2-010	683	97aa	ENSP00000464105.1	Nonsense mediated decay		J3KS57	-	-
ENST00000581546.1	SCRN2-005	1237	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578840.1	SCRN2-009	912	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580428.1	SCRN2-007	717	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582656.1	SCRN2-012	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 952 bps, Translation length: 97 residues

Version

ENST00000579856.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441388 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000579856.1 SCRN2-008

Summary