Transcript: ENST00000571644.1 ITGAX-005

Description

integrin, alpha X (complement component 3 receptor 4 subunit) [Source:HGNC Symbol;Acc:6152]

Gene Synonyms

CD11C, SLEB6

Location

Chromosome 16: 31,371,258-31,394,253 forward strand.

About this transcript

This transcript has 22 exons, is associated with 11802 variant alleles and maps to 706 oligo probes.

Gene

This transcript is a product of gene ENSG00000140678.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268296.4	ITGAX-001	4703	1163aa	ENSP00000268296.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10711	B4DDX0 P20702	NM_000887.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562522.1	ITGAX-004	3990	1169aa	ENSP00000454623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS67014	B4DDX0 H3BN02	NM_001286375.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562918.1	ITGAX-003	980	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571644.1	ITGAX-005	4382	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567409.1	ITGAX-002	1146	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564308.1	ITGAX-008	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562138.1	ITGAX-010	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 0, Transcript length: 4,382 bps,

Version

ENST00000571644.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438811 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000571644.1 ITGAX-005

Summary