Transcript: ENST00000562522.1 ITGAX-004

Description

integrin, alpha X (complement component 3 receptor 4 subunit) [Source:HGNC Symbol;Acc:6152]

Gene Synonyms

CD11C, SLEB6

Location

Chromosome 16: 31,366,543-31,394,264 forward strand.

About this transcript

This transcript has 31 exons, is annotated with 48 domains and features, is associated with 14105 variant alleles and maps to 805 oligo probes.

Gene

This transcript is a product of gene ENSG00000140678.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268296.4	ITGAX-001	4703	1163aa	ENSP00000268296.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10711	B4DDX0 P20702	NM_000887.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562522.1	ITGAX-004	3990	1169aa	ENSP00000454623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS67014	B4DDX0 H3BN02	NM_001286375.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562918.1	ITGAX-003	980	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571644.1	ITGAX-005	4382	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567409.1	ITGAX-002	1146	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564308.1	ITGAX-008	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562138.1	ITGAX-010	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 3,990 bps, Translation length: 1,169 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS67014

Version

ENST00000562522.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432828 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000562522.1 ITGAX-004

Summary