Transcript: ENST00000544861.1 TDG-004

Description

thymine-DNA glycosylase [Source:HGNC Symbol;Acc:11700]

Gene Synonyms

hTDG

Location

Chromosome 12: 104,359,623-104,380,972 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 10190 variant alleles and maps to 282 oligo probes.

Gene

This transcript is a product of gene ENSG00000139372.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392872.3	TDG-001	3251	410aa	ENSP00000376611.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9095	B4E127 F5H539 Q13569	NM_003211.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266775.9	TDG-003	1602	406aa	ENSP00000266775.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E127 F5H539 G8JL98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544861.1	TDG-004	1387	267aa	ENSP00000445899.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E127	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542036.1	TDG-201	1014	206aa	ENSP00000439054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DI29	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537100.1	TDG-008	923	257aa	ENSP00000439825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0I7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000436021.2	TDG-007	824	138aa	ENSP00000390167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H539	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540956.1	TDG-006	1014	111aa	ENSP00000445716.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536395.1	TDG-010	665	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542926.1	TDG-009	1277	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544060.1	TDG-005	1139	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545698.1	TDG-002	862	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,387 bps, Translation length: 267 residues

Version

ENST00000544861.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000399677 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000544861.1 TDG-004

Summary