Transcript: ENST00000547485.1 PTPRQ-008

Description

protein tyrosine phosphatase, receptor type, Q [Source:HGNC Symbol;Acc:9679]

Gene Synonyms

DFNB84

Location

Chromosome 12: 80,906,421-80,933,617 forward strand.

About this transcript

This transcript has 5 exons, is associated with 12233 variant alleles and maps to 106 oligo probes.

Gene

This transcript is a product of gene ENSG00000139304.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000266688.5	PTPRQ-201	6888	2295aa	ENSP00000266688.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9UMZ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551042.1	PTPRQ-002	2336	332aa	ENSP00000447522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W122	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547376.1	PTPRQ-003	1702	353aa	ENSP00000448844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8VXI2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551573.1	PTPRQ-004	1097	283aa	ENSP00000449133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8VW52	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547881.1	PTPRQ-006	439	146aa	ENSP00000449526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000547485.1	PTPRQ-008	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000526956.2	PTPRQ-009	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000551624.1	PTPRQ-007	829	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000549355.1	PTPRQ-010	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 604 bps,

Version

ENST00000547485.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000407750 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000547485.1 PTPRQ-008

Summary