Transcript: ENST00000505117.1 CASP6-008

Description

caspase 6, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1507]

Gene Synonyms

MCH2

Location

Chromosome 4: 110,610,373-110,617,651 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 3246 variant alleles and maps to 374 oligo probes.

Gene

This transcript is a product of gene ENSG00000138794.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265164.2	CASP6-001	1548	293aa	ENSP00000265164.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3684	D6RHU3 P55212	NM_001226.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352981.3	CASP6-002	1340	204aa	ENSP00000285333.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3685	P55212	NM_032992.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503684.1	CASP6-004	587	143aa	ENSP00000427669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHU3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505486.1	CASP6-003	538	80aa	ENSP00000424080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBM3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510324.1	CASP6-006	643	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507550.1	CASP6-009	892	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505117.1	CASP6-008	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508203.1	CASP6-007	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 774 bps,

Version

ENST00000505117.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363783 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000505117.1 CASP6-008

Summary