Transcript: ENST00000352981.3 CASP6-002

Description

caspase 6, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1507]

Gene Synonyms

MCH2

Location

Chromosome 4: 110,609,785-110,624,575 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 6537 variant alleles and maps to 385 oligo probes.

Gene

This transcript is a product of gene ENSG00000138794.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265164.2	CASP6-001	1548	293aa	ENSP00000265164.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3684	D6RHU3 P55212	NM_001226.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352981.3	CASP6-002	1340	204aa	ENSP00000285333.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3685	P55212	NM_032992.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503684.1	CASP6-004	587	143aa	ENSP00000427669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHU3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505486.1	CASP6-003	538	80aa	ENSP00000424080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBM3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510324.1	CASP6-006	643	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507550.1	CASP6-009	892	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505117.1	CASP6-008	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508203.1	CASP6-007	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,340 bps, Translation length: 204 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55212

CCDS

This transcript is a member of the Human CCDS set: CCDS3685

Version

ENST00000352981.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254867 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000352981.3 CASP6-002

Summary