Transcript: ENST00000490638.1 ARHGEF39-004

Description

Rho guanine nucleotide exchange factor (GEF) 39 [Source:HGNC Symbol;Acc:25909]

Gene Synonyms

C9orf100, FLJ14642, RP11-331F9.7

Location

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 7665 variant alleles and maps to 625 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378387.3	ARHGEF39-001	3769	335aa	ENSP00000367638.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6584	Q8N4T4	NM_032818.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378395.2	ARHGEF39-202	3543	299aa	ENSP00000367648.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N4T4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343259.3	ARHGEF39-201	3404	186aa	ENSP00000344922.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N4T4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490638.1	ARHGEF39-004	4498	299aa	ENSP00000436756.1	Nonsense mediated decay		Q8N4T4	-	-
ENST00000475323.1	ARHGEF39-003	2862	186aa	ENSP00000436519.1	Nonsense mediated decay		Q8N4T4	-	-
ENST00000490970.1	ARHGEF39-002	1270	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468876.1	ARHGEF39-006	739	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488918.2	ARHGEF39-005	347	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 9, Transcript length: 4,498 bps, Translation length: 299 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N4T4

Version

ENST00000490638.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052333 (version 3)