Transcript: ENST00000258052.3 SMPD2-001

Description

sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) [Source:HGNC Symbol;Acc:11121]

Gene Synonyms

ISC1, NSMASE, NSMASE1, nSMase

Location

About this transcript

This transcript has 10 exons, is annotated with 8 domains and features, is associated with 1923 variant alleles and maps to 439 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258052.3	SMPD2-001	1645	423aa	ENSP00000258052.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5075	O60906	NM_003080.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458487.1	SMPD2-003	613	204aa	ENSP00000399731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000439615.1	SMPD2-002	482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,645 bps, Translation length: 423 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60906

CCDS

This transcript is a member of the Human CCDS set: CCDS5075

Version

ENST00000258052.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041755 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.