Transcript: ENST00000257248.2 GIF-001

Description

gastric intrinsic factor (vitamin B synthesis) [Source:HGNC Symbol;Acc:4268]

Gene Synonyms

IF, IFMH, INF, TCN3

Location

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 7177 variant alleles and maps to 402 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541311.1	GIF-201	1623	392aa	ENSP00000440427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P27352	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000257248.2	GIF-001	1518	417aa	ENSP00000257248.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7977	P27352	NM_005142.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525058.1	GIF-003	1623	48aa	ENSP00000433196.1	Nonsense mediated decay		E9PM21	-	-
ENST00000532070.1	GIF-002	977	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533847.1	GIF-004	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533067.1	GIF-005	386	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,518 bps, Translation length: 417 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P27352

CCDS

This transcript is a member of the Human CCDS set: CCDS7977

Version

ENST00000257248.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000394497 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.