Transcript: ENST00000256497.4 EDEM1-001

Description

ER degradation enhancer, mannosidase alpha-like 1 [Source:HGNC Symbol;Acc:18967]

Gene Synonyms

EDEM, KIAA0212

Location

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 16394 variant alleles and maps to 603 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256497.4	EDEM1-001	6146	657aa	ENSP00000256497.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33686	Q92611	NM_014674.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445686.1	EDEM1-003	1363	376aa	ENSP00000394099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DXP3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434243.1	EDEM1-004	978	78aa	ENSP00000393659.1	Nonsense mediated decay		F8WER9	-	-
ENST00000443790.1	EDEM1-007	730	53aa	ENSP00000394615.1	Nonsense mediated decay		F8WE67	-	-
ENST00000465369.1	EDEM1-002	1956	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465187.1	EDEM1-005	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492751.1	EDEM1-006	307	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 6,146 bps, Translation length: 657 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92611

CCDS

This transcript is a member of the Human CCDS set: CCDS33686

Version

ENST00000256497.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000337566 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.