Transcript: ENST00000254950.11 VPS4A-002

Description

vacuolar protein sorting 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:13488]

Gene Synonyms

FLJ22197, SKD1, SKD1A, SKD2, VPS4, VPS4-1

Location

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 7722 variant alleles and maps to 436 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254950.11	VPS4A-002	2203	437aa	ENSP00000254950.11	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45517	Q9UF30 Q9UN37	NM_013245.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564399.1	VPS4A-003	471	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566354.1	VPS4A-001	2329	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562754.1	VPS4A-004	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,203 bps, Translation length: 437 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UN37

CCDS

This transcript is a member of the Human CCDS set: CCDS45517

Version

ENST00000254950.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000430563 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.