Transcript: ENST00000390669.3 CCL25-003

Description

chemokine (C-C motif) ligand 25 [Source:HGNC Symbol;Acc:10624]

Gene Synonyms

Ckb15, SCYA25, TECK

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 5216 variant alleles and maps to 295 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253451.4	CCL25-001	953	149aa	ENSP00000253451.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56080	O15444	NM_005624.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000390669.3	CCL25-003	924	150aa	ENSP00000375086.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12194	O15444	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000315626.4	CCL25-201	361	84aa	ENSP00000324756.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDZ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458625.1	CCL25-002	744	84aa	ENSP00000401882.1	Nonsense mediated decay		C9JDZ7	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 924 bps, Translation length: 150 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15444

CCDS

This transcript is a member of the Human CCDS set: CCDS12194

Version

ENST00000390669.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000280522 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.