Transcript: ENST00000488228.1 UBE4B-009

Description

ubiquitination factor E4B [Source:HGNC Symbol;Acc:12500]

Gene Synonyms

E4, HDNB1, KIAA0684, UBOX3, UFD2, UFD2A

Location

Chromosome 1: 10,218,412-10,231,247 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 5415 variant alleles and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000130939.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343090.6	UBE4B-001	5267	1302aa	ENSP00000343001.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41245	O95155	NM_001105562.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377157.3	UBE4B-201	5522	1061aa	ENSP00000366362.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95155	NM_006048.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000253251.8	UBE4B-002	4772	1173aa	ENSP00000253251.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS110	O95155	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377153.1	UBE4B-005	1273	100aa	ENSP00000366358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AQ61	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470736.1	UBE4B-011	827	276aa	ENSP00000467258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000488228.1	UBE4B-009	560	98aa	ENSP00000468178.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475795.1	UBE4B-007	871	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465408.1	UBE4B-010	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466379.1	UBE4B-003	2299	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487244.1	UBE4B-004	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462658.1	UBE4B-008	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 560 bps, Translation length: 98 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000488228.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000005024 (version 2)

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Transcript: ENST00000488228.1 UBE4B-009

Summary