Transcript: ENST00000253251.8 UBE4B-002

Description

ubiquitination factor E4B [Source:HGNC Symbol;Acc:12500]

Gene Synonyms

E4, HDNB1, KIAA0684, UBOX3, UFD2, UFD2A

Location

Chromosome 1: 10,092,890-10,240,425 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 17 domains and features, is associated with 63939 variant alleles and maps to 941 oligo probes.

Gene

This transcript is a product of gene ENSG00000130939.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343090.6	UBE4B-001	5267	1302aa	ENSP00000343001.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41245	O95155	NM_001105562.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377157.3	UBE4B-201	5522	1061aa	ENSP00000366362.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95155	NM_006048.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000253251.8	UBE4B-002	4772	1173aa	ENSP00000253251.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS110	O95155	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377153.1	UBE4B-005	1273	100aa	ENSP00000366358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AQ61	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470736.1	UBE4B-011	827	276aa	ENSP00000467258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000488228.1	UBE4B-009	560	98aa	ENSP00000468178.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475795.1	UBE4B-007	871	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465408.1	UBE4B-010	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466379.1	UBE4B-003	2299	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487244.1	UBE4B-004	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462658.1	UBE4B-008	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 4,772 bps, Translation length: 1,173 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95155

CCDS

This transcript is a member of the Human CCDS set: CCDS110

Version

ENST00000253251.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000005017 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000253251.8 UBE4B-002

Summary