Transcript: ENST00000588376.1 SHC2-003

Description

SHC (Src homology 2 domain containing) transforming protein 2 [Source:HGNC Symbol;Acc:29869]

Gene Synonyms

SCK, SHCB, SLI

Location

Chromosome 19: 416,583-422,828 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 3766 variant alleles and maps to 179 oligo probes.

Gene

This transcript is a product of gene ENSG00000129946.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264554.6	SHC2-001	2494	582aa	ENSP00000264554.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45891	P98077	NM_012435.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590113.2	SHC2-011	605	143aa	ENSP00000475250.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591388.1	SHC2-005	473	99aa	ENSP00000476217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590222.1	SHC2-007	951	69aa	ENSP00000466869.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590170.1	SHC2-009	806	65aa	ENSP00000465764.1	Nonsense mediated decay		K7EKS8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589922.1	SHC2-002	2650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587423.1	SHC2-004	1697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588376.1	SHC2-003	1557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,557 bps,

Version

ENST00000588376.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451839 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000588376.1 SHC2-003

Summary