Transcript: ENST00000473642.1 CCL20-003

Description

chemokine (C-C motif) ligand 20 [Source:HGNC Symbol;Acc:10619]

Gene Synonyms

CKb4, LARC, MIP-3-alpha, MIP-3a, MIP3A, SCYA20, ST38, exodus-1

Location

About this transcript

This transcript has 3 exons, is associated with 886 variant alleles and maps to 239 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409189.3	CCL20-001	831	95aa	ENSP00000386273.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46536	P78556	NM_004591.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358813.4	CCL20-004	800	96aa	ENSP00000351671.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2469	P78556	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473642.1	CCL20-003	680	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489160.1	CCL20-002	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 680 bps,

Version

ENST00000473642.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331640 (version 1)