Transcript: ENST00000358813.4 CCL20-004

Description

chemokine (C-C motif) ligand 20 [Source:HGNC Symbol;Acc:10619]

Gene Synonyms

CKb4, LARC, MIP-3-alpha, MIP-3a, MIP3A, SCYA20, ST38, exodus-1

Location

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 1541 variant alleles and maps to 258 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409189.3	CCL20-001	831	95aa	ENSP00000386273.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46536	P78556	NM_004591.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358813.4	CCL20-004	800	96aa	ENSP00000351671.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2469	P78556	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473642.1	CCL20-003	680	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489160.1	CCL20-002	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 800 bps, Translation length: 96 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P78556

CCDS

This transcript is a member of the Human CCDS set: CCDS2469

Version

ENST00000358813.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000331641 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.