Transcript: ENST00000470652.1 COL9A1-003

Description

collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]

Gene Synonyms

DJ149L1.1.2, EDM6, MED, STL4

Location

Chromosome 6: 70,983,715-70,984,881 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 625 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSG00000112280.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357250.6	COL9A1-001	4761	921aa	ENSP00000349790.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4971	P20849	NM_001851.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320755.7	COL9A1-002	3059	678aa	ENSP00000315252.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47447	P20849	NM_078485.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370499.4	COL9A1-201	2893	678aa	ENSP00000359530.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NEQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370496.3	COL9A1-004	1372	328aa	ENSP00000359527.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P20849	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489611.1	COL9A1-009	1940	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486080.1	COL9A1-008	1844	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000360859.6	COL9A1-010	699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000447041.2	COL9A1-007	690	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493682.2	COL9A1-005	1117	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470652.1	COL9A1-003	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489861.2	COL9A1-006	243	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 531 bps,

Version

ENST00000470652.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000041133 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000470652.1 COL9A1-003

Summary